Species Motif Extraction Using Lpbs
نویسندگان
چکیده
This paper presents the use of the ̳Linear-PSO with Binary Search‘ (LPBS) algorithm for discovering motifs, especially species-specific motifs. In this study, fragments of mitochondrial cytochrome C oxidase subunit I (COI/COX1) and genome of COI were collected from the Genbank online database. For the first experiment, the genome of COI was used as a reference set and other DNA sequences were used as a comparison set. All the collected DNA sequences are from the same species. The results show that the LPBS algorithm is able to discover motifs. For the second experiment, all the discovered motifs were used as a reference set and the genome of COI from other species were used as a comparison set. The results show that the LPBS algorithm is able to identify correct motifs for species identification.
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